Inspect a resolved genome recipe without building

Resolves name through the registry chain and returns the recipe (a list) along with the source it was resolved from. Useful for previewing what gdb.build_genome would do.

gdb.genome_info(name, registry = NULL)

Arguments

name

Genome name.

registry

Optional path to an explicit registry YAML.

Value

A list with components recipe (the resolved recipe) and resolved_from (the registry source).

See also

gdb.build_genome, gdb.list_genomes.

Examples

gdb.genome_info("hg38")
#> $recipe
#> $recipe$source
#> [1] "ucsc"
#> 
#> $recipe$assembly
#> [1] "hg38"
#> 
#> 
#> $resolved_from
#> [1] "built-in (inst/genomes.yaml)"
#> 
gdb.genome_info("GCF_009806435.1")
#> $recipe
#> $recipe$source
#> [1] "ucsc-hub"
#> 
#> $recipe$accession
#> [1] "GCF_009806435.1"
#> 
#> 
#> $resolved_from
#> [1] "pattern fallback (UCSC mammal hub accession)"
#>