Combines several sets of intervals into one set.
gintervals.rbind(..., intervals.set.out = NULL)intervals sets to combine
intervals set name where the function result is optionally outputted
intervals set
If 'intervals.set.out' is 'NULL' a data frame combining intervals sets.
This function combines several intervals sets into one set. It works in a similar manner as 'rbind' yet it is faster. Also it supports intervals sets that are stored in files including the big intervals sets.
If 'intervals.set.out' is not 'NULL' the result is saved as an intervals set. If the format of the output intervals is set to be "big" (determined implicitly based on the result size and options), the order of the resulted intervals is altered as they are sorted by chromosome (or chromosomes pair - for 2D).
# \dontshow{
options(gmax.processes = 2)
# }
gdb.init_examples()
intervs1 <- gextract("sparse_track", gintervals(c(1, 2), 1000, 4000))
intervs2 <- gextract("sparse_track", gintervals(c(2, "X"), 2000, 5000))
gintervals.save("testintervs", intervs2)
gintervals.rbind(intervs1, "testintervs")
#> chrom start end sparse_track intervalID
#> 1 chr1 1400 1450 0.5200000 1
#> 2 chr2 2100 2150 0.4800000 2
#> 3 chr2 2300 2350 0.6400000 2
#> 4 chr2 2500 2550 0.4400000 2
#> 5 chr2 2900 2950 0.3600000 2
#> 6 chr2 3250 3300 0.3600000 2
#> 7 chr2 3450 3500 0.4000000 2
#> 8 chr2 3550 3600 0.4000000 2
#> 9 chr2 3700 3750 0.6000000 2
#> 10 chr2 2100 2150 0.4800000 1
#> 11 chr2 2300 2350 0.6400000 1
#> 12 chr2 2500 2550 0.4400000 1
#> 13 chr2 2900 2950 0.3600000 1
#> 14 chr2 3250 3300 0.3600000 1
#> 15 chr2 3450 3500 0.4000000 1
#> 16 chr2 3550 3600 0.4000000 1
#> 17 chr2 3700 3750 0.6000000 1
#> 18 chr2 4300 4350 0.3600000 1
#> 19 chr2 4550 4600 0.5200000 1
#> 20 chr2 4650 4700 0.4800000 1
#> 21 chr2 4900 5000 0.5700000 1
#> 22 chrX 2600 2650 0.3600000 2
#> 23 chrX 3150 3250 0.4200000 2
#> 24 chrX 3500 3650 0.4533333 2
#> 25 chrX 3700 3750 0.4400000 2
#> 26 chrX 3900 3950 0.3600000 2
#> 27 chrX 4100 4150 0.7200000 2
#> 28 chrX 4800 4850 0.3600000 2
#> 29 chrX 4900 5000 0.3800000 2
gintervals.rm("testintervs", force = TRUE)