Returns DNA sequences for given intervals
gseq.extract(intervals = NULL)intervals for which DNA sequence is returned
An array of character strings representing DNA sequence.
This function returns an array of sequence strings for each interval from 'intervals'. If intervals contain an additional 'strand' column and its value is '-1', the reverse-complementary sequence is returned.
# \dontshow{
options(gmax.processes = 2)
# }
gdb.init_examples()
intervs <- gintervals(c(1, 2), 10000, 10020)
gseq.extract(intervs)
#> [1] "ccaggggccagcactgctcg" "GGGGCTCCCACCCGCCGTCC"