'misha' package is intended to help users to efficiently analyze genomic data achieved from various experiments.
For a complete list of help resources, use library(help = "misha").
The following options are available for the package. Use 'options' function to alter the value of the options.
| NAME | DEFAULT | DESCRIPTION |
| gmax.data.size | 10000000 | Maximal number of data (intervals, ...) in large data sets stored |
| in memory. Prevents excessive memory usage by various functions | ||
| such as 'gextract', 'gscreen', etc. | ||
| gbig.intervals.size | 1000000 | Minimal number of intervals in a big intervals set format |
| gmax.mem.usage | 10000000 | Maximal memory consumption of all child processes in KB before the limiting algorithm is invoked. |
| gmax.processes | 16 | Maximal number of processes for multitasking |
| gmax.processes2core | 2 | Maximal number of processes per CPU core for multitasking |
| gmin.scope4process | 10000 | Minimal scope range (for 2D: surface) assigned to a |
| process in multitasking mode. | ||
| gbuf.size | 1000 | Size of track expression values buffer. |
| gtrack.chunk.size | 100000 | Chunk size in bytes of a 2D track. If '0' chunk size is unlimited. |
| gtrack.num.chunks | 0 | Maximal number of 2D track chunks simultaneously stored in |
| memory. |
More information about the options can be found in 'User manual' of the package.
Useful links: