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Convert PSSM to consensus sequence

consensus_from_pssm.Rd

Convert PSSM to consensus sequence

Usage

consensus_from_pssm(pssm, single_thresh = 0.4, double_thresh = 0.6)

Arguments

pssm

A PSSM matrix

single_thresh, double_thresh

thresholds for the consensus sequence calculation (single and double nucleotides)

Value

A consensus sequence for the PSSM. If no consensus sequence can be found, the function returns NA.

Examples

if (FALSE) { # \dontrun{
res <- regress_pwm(cluster_sequences_example, cluster_mat_example[, 1])
consensus_from_pssm(res$pssm)
} # }