Add targets to a guideSet object
addTargets(guideSet, targets = NULL, force = FALSE)
guideSet | guideSet object containing genome annotation. |
---|---|
targets | Character vector of family identifiers or GRanges object with coordinates and 'repname' metacolumn. |
force | Logical. If |
Returns a guideSet object containing targets.
if (FALSE) { gs <- createGuideSet(Hsapiens, tes = te_anno) # Use family identifiers as targets gs <- addTargets(guideSet, targets = c('LTR12C', 'LTR12E')) # Use custom regions as targets target_coords <- GenomicRanges::makeGRangesFromDataFrame(data.frame('chrom' = c('chr1', 'chr4'), 'start' = c(1000, 10020), 'end' = c(1122, 10090), 'strand' = c('+', '-'), 'repname' = c('ImaginativeTE', 'ImaginativeTE'), 'te_id' = c(1:2)), keep.extra.columns = TRUE) gs <- addTargets(guideSet, targets = target_coords) }