Import fastq files to a genomic track. — p4cCreate4CseqTrack • umi4cPackage

Generate a genomic track from fastqs listed in the samples.conf file.

p4cCreate4CseqTrack(
  sample_ids = NULL,
  track_desc = "4C track",
  verbose = TRUE,
  overwrite.if.exist = FALSE,
  groot = NULL
)

Arguments

sample_ids	Numerical samples IDs from the baits.txt table.
track_desc	Description attribute. Optional.
verbose	Logical. Controls verbosity.
groot	Optional. Controls the trackdb to which tracks are imported.
overwrite.if.exists	Force overwriting on older tracks.

Examples

# \donttest{
# Load config files
p4cLoadConfFiles("conf/")
#> Warning: cannot open file 'conf//paths.conf': No such file or directory
#> Error in file(file, "rt"): cannot open the connection

# Import 3 tracks
p4cCreate4CseqTrack(1:3)
#> Error in .checkConf(): Missing conf parameters! Have you loaded the files with 4cLoadConfFiles?
# }