MCView creates a shiny-app facilitating interactive exploration and annotation of metacell models. Metacell itself is described here. You can also explore examples of MCV output for PBMC and Mouse organogenesis on the Tanay group server.
Install the latest github release:
Or install the development version:
See the vignette.
MCView::import_dataset(project = "PBMC", dataset = "PBMC163k", anndata_file = "raw/metacells.h5ad")
You can run the app from R using:
MCView::run_app("PBMC", launch.browser = TRUE)
Or from shell: