Package index

All functions

calc_gene_gene_correlations()

Calculate gene-gene correlations (correlation between input genes)

calc_individual_correlations()

Calculate correlations for multiple genes individually

calc_module_correlations()

Calculate correlations for genes as a module/anchor

cell_metadata_to_metacell() cell_metadata_to_metacell_from_metacell1() cell_metadata_to_metacell_from_h5ad()

Convert cell metadata to metacell metadata

clipboard_copy_button_server()

Create server logic for copy button notifications

clipboard_copy_button_ui()

Create a reactive copy button using rclipboard

create_bundle()

Generate a 'deployment ready' bundle of the a project app

create_project()

Create a configuration folder for a project

dataset_ls()

List datasets in a project

dataset_rm()

Remove a dataset from a project

import_cell_metadata()

Import cell metadata to an MCView dataset

import_dataset()

Import a dataset to an MCView project

import_dataset_metacell1()

Import a dataset to an MCView project from metacell R package

plot_correlation_barplot()

Create correlation barplot for single gene

plot_correlation_heatmap()

Create correlation heatmap for multiple genes

print(<gt_custom>)

Print method for "gt_custom" class we are overriding the print function, similiar to the one at shiny/render-plot.R: https://github.com/rstudio/shiny/blob/main/R/render-plot.R in order to provide a separate ggplot_build and gtable objects

run_app()

Run the MCView Application

update_2d_projection()

Update default 2D projection for a dataset

update_cell_type_colors()

Update color assignment for each cell type

update_gene_modules()

Update gene modules

update_metacell_types()

Update cell type assignment for each metacell

update_metadata()

Update metadata for a dataset

update_metadata_colors()

Update metadata colors for a dataset