Returns a list of named intervals sets

Returns a list of named intervals sets in Genomic Database.

gintervals.ls(
  pattern = "",
  db = NULL,
  ignore.case = FALSE,
  perl = FALSE,
  fixed = FALSE,
  useBytes = FALSE
)

Arguments

pattern, ignore.case, perl, fixed, useBytes

see 'grep'

db

optional database path to filter intervals. If specified, only interval sets from that database are returned.

Value

An array that contains the names of intervals sets.

Details

This function returns a list of named intervals sets that match the pattern (see 'grep'). If called without any arguments all named intervals sets are returned.

When multiple databases are connected, the 'db' parameter can be used to filter intervals to only those from a specific database.

See also

grep, gintervals.exists, gintervals.load, gintervals.save, gintervals.rm, gintervals, gintervals.2d, gintervals.dataset

Examples

gdb.init_examples()
gintervals.ls()
#> [1] "annotations"
gintervals.ls(pattern = "annot*")
#> [1] "annotations"