Construct a meta cell reference atlas — initialize,tgMCAtlas-method • metacell

Construct a meta cell reference atlas

# S4 method for tgMCAtlas
initialize(.Object, mat_id, naming_type, mc_id, graph_id, gset_id, type_annot)

Arguments

mat_id: umi matrix of the reference
naming_type: gene naming type
mc_id: metacell object id
graph_id: KNN adjacencies for the atlas
gset_id: gene set id for defining features
type_annot: data frame with type_id, type_name, type_color fields