Compute predictive value of MC cover as correlation of MC averages of sc umis — mcell_graph_pred_corr • metacell

Compute predictive value of MC cover as correlation of MC averages of sc umis

mcell_graph_pred_corr(
  mat_id,
  graph_id,
  do_log = F,
  focus_cells = NULL,
  filt_genes = NULL
)

Arguments

mat_id: id of matrix to analyze
graph_id: id of cgraph to use for computing neighborhood per cell
do_log: should log transofmration be performed
focus_cells: should correltion be computed to a specific set of cells