Plot the (log2) metacell footprint value of the selected gene on the 2d projection

mcell_mc2d_plot_gene(
  mc2d_id,
  gene,
  show_mc_ids = F,
  show_legend = T,
  neto_points = F,
  max_lfp = NA,
  min_lfp = NA,
  color_cells = F,
  mat_ds = NULL,
  zero_sc_v = 0,
  one_sc_v = 1,
  two_sc_v = 2,
  base_dir = NULL,
  filt_mc = NULL
)

Arguments

mc2d_id: mc2d object to use for plot
gene: gene name to plot
show_mc_ids: plot metacell ids (false by default)
show_legend: plot color bar legend (true by default)
neto_points: do not plot box, title and legend
color_cells: (F default) should cells be colored by UMIs
mat_ds: downsampled matrix for coloring cells
zero_sc_v: num of umis to consdier as 0 for cell coloring (def 0)
one_sc_v: num of umis to consdier as 1 for cell coloring (def 1)
base_dir: override the default base directory if not null
filt_mc: (defulat is NULL) - factor to determine which metacells to plot
tw_sc_v: num of umis to consdier as 1 for cell coloring (def 2)