Output genes cell modules footprint matrix with metadata on the cell modules

Source: R/mc_export_tab.r

Output genes cell modules footprint matrix with metadata on the cell modules

mcell_mc_export_tab(
  mc_id,
  gstat_id = NULL,
  mat_id = NULL,
  T_gene_tot = 50,
  T_fold = 1,
  metadata_fields = c("batch_set_id")
)

Arguments

mc_id

meta cell object id

gstat_id

gstat object id

T_gene_tot

minimal number of umis to include gene (to reduce table size)

T_fold

threshold for maximal fold change over metacells

metadata_fields

metadata field names to be used as factors and breakdown over mcs

Value

Nothing. But save a table in the figure directory that can be loaded to excel