Reorder metacells using hierarchical clustering — mcell_mc_reorder

MEtacells are reorder according to their footprint similarity based on hclust and the reordering using two select antagonistic markers (that can be selected automatically)

mcell_mc_reorder_hc(
  mc_id,
  gene_left = NULL,
  gene_right = NULL,
  gset_blist_id = NULL
)

Arguments

mc_id: id of metacell object
gene_left: gene for reordering toward the left side (null by default)
gene_right: gene for reordering toward the right side (null by default)
gset_blist_id: id of gene set to blacklist while ordering (e.g. cell cycle genes)