Compute metacell manifold graph using logistic distances and balanced K-nn

Source: R/mgraph_logistic.r

Compute metacell manifold graph using logistic distances and balanced K-nn

mcell_mgraph_logistic(
  mgraph_id,
  mc_id,
  feats_gset,
  ignore_edges = NULL,
  feats_exclude = NULL,
  logist_loc = 1,
  logist_scale = 0.2,
  logist_eps = 0.00004,
  max_d_fold = 3
)

Arguments

mgraph_id

id of new object

mc_id

meta cell id to work with

feats_gset

gene set name for use for computing distances

ignore_edges

provide a data frame with mc1,mc2 pairs of edges to delete manually

feats_exclude

list of genes to exclude from the features gene set

logist_loc

the "location" parametr of the logistic function used to determine parametric distances between metacelles

logist_scale

the "lscale" parametr of the logistic function used to determine parametric distances between metacelles