This constructs a meta cell atlas object

mcell_new_mcatlas(
  atlas_id,
  mat_id,
  naming_type,
  mc_id,
  graph_id,
  gset_id,
  type_annot
)

Arguments

mat_id

id matrix object

naming_type

gene name type

mc_id

id of metacell object

graph_id

id of cgraph object

gset_id

id of feature gene set

type_annot

data frame with type_id, type_name, type_color fields

edges_Knn

the knn parameter for neighbor type distribution