Generate a new atlas in scdb — mcell_new_mcatlas • metacell

This constructs a meta cell atlas object

mcell_new_mcatlas(
  atlas_id,
  mat_id,
  naming_type,
  mc_id,
  graph_id,
  gset_id,
  type_annot
)

Arguments

mat_id: id matrix object
naming_type: gene name type
mc_id: id of metacell object
graph_id: id of cgraph object
gset_id: id of feature gene set
type_annot: data frame with type_id, type_name, type_color fields
edges_Knn: the knn parameter for neighbor type distribution