Plotting a matrix of co-occurences between two metacell covers of the same dataset

Plotting a matrix of co-occurences between two metacell covers of the same dataset

mcell_plot_cross_mc(mc_id1, mc_id2, ord_1 = NULL, ord_2 = NULL, not_log = F)

Arguments

mc_id1

first mc object to use

mc_id2

second mc object to use

ord_1

optional ordering of first MC set (default is original order)

ord_2

optional ordering of second MC set (Default is based on max intersection with the first set)

not_log

use this to avoid using log scale on the colors - making the best match MC more pronanouced