Read a custom count matrix from the output of a 10x run. Batches can be stripped from the cell identifier if in BARCODE-LANE format.

Source: R/scmat_10x.r

Read a custom count matrix from the output of a 10x run. Batches can be stripped from the cell identifier if in BARCODE-LANE format.

scmat_read_scmat_10x_custom(matrix_fn, dataset_id = "NS")

Arguments

matrix_fn

matrix input file name. Expecting a count matrix saved as .RDS file. Colnames represent barcodes, rownames represent custom gene annotation.